Index

_

__init__() (services.clinical_extraction.ClinicalExtractionService method) (services.ClinicalExtractionService method) (services.extraction.ClinicalExtractionService method) (services.mongodb_service.MongoDBService method) (services.ner_service.NERService method) (services.nvidia_nim.NVIDIANIMService method) (services.pdf_report.PDFReportService method) (services.transcription.TranscriptionService method) (services.TranscriptionService method) (services.whisper_service.WhisperService method)

__str__() (core.models.AudioTranscript method) (core.models.ClinicalData method) (core.models.ClinicalReport method) (core.models.Doctor method) (core.models.Encounter method) (core.models.Patient method)

A

admission_time (core.models.Encounter attribute) age (core.models.Patient property) allergies (core.models.ClinicalData attribute) (core.models.Patient attribute) api module api.admin module api.apps module api.medical_workflow_views module api.models module api.serializers module api.tests module

api.urls module api.views module ApiConfig (class in api.apps) assessment (core.models.ClinicalData attribute) audio_duration (core.models.AudioTranscript attribute) audio_file (core.models.AudioTranscript attribute) AudioSegment (class in core.mongodb_models) AudioTranscript (class in core.models) (class in core.mongodb_models) AudioTranscript.DoesNotExist AudioTranscript.MultipleObjectsReturned AudioTranscriptSerializer (class in api.serializers) AudioTranscriptSerializer.Meta (class in api.serializers) AudioUploadSerializer (class in api.serializers) auth_views module average_confidence (core.mongodb_models.AudioTranscript property)

B

blood_type (core.models.Patient attribute)

C

check_dependencies() (in module services.transcription) chief_complaint (core.models.ClinicalData attribute) (core.models.Encounter attribute) clinical_assessment (core.mongodb_models.ClinicalData attribute) clinical_data (core.models.AudioTranscript attribute) (core.models.ClinicalReport attribute) (core.mongodb_models.AudioTranscript attribute) clinical_data_id (core.models.ClinicalReport attribute) ClinicalAssessment (class in core.mongodb_models) ClinicalData (class in core.models) (class in core.mongodb_models) ClinicalData.DoesNotExist ClinicalData.MultipleObjectsReturned clinicaldata_set (core.models.Doctor attribute) ClinicalDataSerializer (class in api.serializers) ClinicalDataSerializer.Meta (class in api.serializers) ClinicalExtractionService (class in services) (class in services.clinical_extraction) (class in services.extraction) ClinicalReport (class in core.models) (class in core.mongodb_models) ClinicalReport.DoesNotExist ClinicalReport.MultipleObjectsReturned clinicalreport_set (core.models.ClinicalData attribute) (core.models.Doctor attribute) ClinicalReportSerializer (class in api.serializers) ClinicalReportSerializer.Meta (class in api.serializers) codice_fiscale (core.models.ClinicalData attribute) Command (class in core.management.commands.create_demo_data) confidence_score (core.models.AudioTranscript attribute) (core.models.ClinicalData attribute) core module

core.admin module core.apps module core.management module core.management.commands module core.management.commands.create_demo_data module core.migrations module core.migrations.0001_initial module core.migrations.0002_audiotranscript_clinicaldata_clinicalreport module core.migrations.0003_alter_clinicaldata_options module core.models module core.mongodb_models module core.tests module core.views module CoreConfig (class in core.apps) created_at (core.models.AudioTranscript attribute) (core.models.ClinicalReport attribute) (core.models.Doctor attribute) (core.models.Encounter attribute) (core.models.Patient attribute)

D

date_joined (core.models.Doctor attribute) date_of_birth (core.models.Patient attribute) default_auto_field (api.apps.ApiConfig attribute) (core.apps.CoreConfig attribute) delete_visit() (services.mongodb_service.MongoDBService method) department (core.models.Doctor attribute) dependencies (core.migrations.0001_initial.Migration attribute) (core.migrations.0002_audiotranscript_clinicaldata_clinicalreport.Migration attribute) (core.migrations.0003_alter_clinicaldata_options.Migration attribute) diagnosis (core.models.ClinicalData attribute) discharge_time (core.models.Encounter attribute)

Doctor (class in core.models) doctor (core.models.Encounter attribute) Doctor.DoesNotExist Doctor.MultipleObjectsReturned doctor_id (core.models.Doctor attribute) (core.models.Encounter attribute) DoctorSerializer (class in api.serializers) DoctorSerializer.Meta (class in api.serializers) DoctorViewSet (class in api.views) duration (core.models.Encounter property) duration_seconds (core.mongodb_models.AudioTranscript property)

E

email (core.models.Doctor attribute) emergency_contact (core.models.Patient attribute) Encounter (class in core.models) encounter (core.models.AudioTranscript attribute) (core.models.ClinicalReport attribute) Encounter.DoesNotExist Encounter.MultipleObjectsReturned encounter_id (core.models.AudioTranscript attribute) (core.models.ClinicalReport attribute) (core.models.Encounter attribute) encounters (core.models.Doctor attribute) (core.models.Patient attribute)

encounters() (api.views.DoctorViewSet method) (api.views.PatientViewSet method) EncounterSerializer (class in api.serializers) EncounterSerializer.Meta (class in api.serializers) EncounterViewSet (class in api.views) error_message (core.models.AudioTranscript attribute) extract_clinical_data() (services.ClinicalExtractionService method) (services.extraction.ClinicalExtractionService method) extract_clinical_entities() (services.clinical_extraction.ClinicalExtractionService method) (services.ner_service.NERService method) (services.nvidia_nim.NVIDIANIMService method) extracted_at (core.models.ClinicalData attribute) ExtractionMethod (class in services.clinical_extraction)

F

fields (api.serializers.AudioTranscriptSerializer.Meta attribute) (api.serializers.ClinicalDataSerializer.Meta attribute) (api.serializers.ClinicalReportSerializer.Meta attribute) (api.serializers.DoctorSerializer.Meta attribute) (api.serializers.EncounterSerializer.Meta attribute) (api.serializers.PatientSerializer.Meta attribute)

finalized_at (core.models.ClinicalReport attribute) finalized_by (core.models.ClinicalReport attribute) finalized_by_id (core.models.ClinicalReport attribute) first_name (core.models.Doctor attribute) (core.models.Patient attribute) fiscal_code (core.models.Patient attribute)

G

gender (core.models.Patient attribute) GENDER_CHOICES (core.models.Patient attribute) generate_medical_report() (services.pdf_report.PDFReportService method) generate_report_content() (services.mongodb_service.MongoDBService method) GenerateReportSerializer (class in api.serializers) GenerateReportView (class in api.views) get_all_patients_summary() (services.mongodb_service.MongoDBService method) get_all_visits_summary() (services.mongodb_service.MongoDBService method) get_available_methods() (services.clinical_extraction.ClinicalExtractionService method) get_completed_visits_today() (services.mongodb_service.MongoDBService method) get_full_name() (core.models.Doctor method) (core.models.Patient method) get_gender_display() (core.models.Patient method) get_method_comparison() (services.clinical_extraction.ClinicalExtractionService method) get_next_by_admission_time() (core.models.Encounter method) get_next_by_created_at() (core.models.AudioTranscript method) (core.models.ClinicalReport method) (core.models.Doctor method) (core.models.Encounter method) (core.models.Patient method) get_next_by_date_joined() (core.models.Doctor method) get_next_by_date_of_birth() (core.models.Patient method) get_next_by_extracted_at() (core.models.ClinicalData method) get_next_by_updated_at() (core.models.AudioTranscript method) (core.models.ClinicalReport method) (core.models.Encounter method) (core.models.Patient method)

get_nvidia_nim_service() (in module services.nvidia_nim) get_patient_visits() (services.mongodb_service.MongoDBService method) get_pdf_report_service() (in module services.pdf_report) get_previous_by_admission_time() (core.models.Encounter method) get_previous_by_created_at() (core.models.AudioTranscript method) (core.models.ClinicalReport method) (core.models.Doctor method) (core.models.Encounter method) (core.models.Patient method) get_previous_by_date_joined() (core.models.Doctor method) get_previous_by_date_of_birth() (core.models.Patient method) get_previous_by_extracted_at() (core.models.ClinicalData method) get_previous_by_updated_at() (core.models.AudioTranscript method) (core.models.ClinicalReport method) (core.models.Encounter method) (core.models.Patient method) get_report_path() (services.pdf_report.PDFReportService method) get_status_display() (core.models.AudioTranscript method) (core.models.Encounter method) get_supported_formats() (services.whisper_service.WhisperService method) get_template_type_display() (core.models.ClinicalReport method) get_triage_priority_display() (core.models.Encounter method) get_unique_patients() (services.mongodb_service.MongoDBService method) get_visit_data() (services.mongodb_service.MongoDBService method) get_visits_today() (services.mongodb_service.MongoDBService method) get_waiting_patients_count() (services.mongodb_service.MongoDBService method) groups (core.models.Doctor attribute)

H

handle() (core.management.commands.create_demo_data.Command method) health_check() (in module auth_views)

height (core.models.Patient attribute) help (core.management.commands.create_demo_data.Command attribute) history_present_illness (core.models.ClinicalData attribute)

I

id (core.models.AudioTranscript attribute) (core.models.ClinicalData attribute) (core.models.ClinicalReport attribute) (core.models.Doctor attribute) (core.models.Encounter attribute) (core.models.Patient attribute)

initial (core.migrations.0001_initial.Migration attribute) is_active (core.models.Doctor attribute) is_connected() (services.mongodb_service.MongoDBService method) is_emergency_doctor (core.models.Doctor attribute) is_finalized (core.models.ClinicalReport attribute) is_staff (core.models.Doctor attribute) is_superuser (core.models.Doctor attribute)

L

language (core.models.AudioTranscript attribute) last_login (core.models.Doctor attribute) last_login_at (core.models.Doctor attribute) last_name (core.models.Doctor attribute) (core.models.Patient attribute)

license_number (core.models.Doctor attribute) LLM (services.clinical_extraction.ExtractionMethod attribute) logentry_set (core.models.Doctor attribute) login_view() (in module auth_views) LoginSerializer (class in api.serializers) logout_view() (in module auth_views)

M

main() (in module manage) manage module medical_system module medical_system.asgi module medical_system.settings module medical_system.urls module medical_system.wsgi module MedicalPatientData (class in core.mongodb_models) medications (core.models.ClinicalData attribute) meta (core.mongodb_models.AudioTranscript attribute) (core.mongodb_models.ClinicalReport attribute) Migration (class in core.migrations.0001_initial) (class in core.migrations.0002_audiotranscript_clinicaldata_clinicalreport) (class in core.migrations.0003_alter_clinicaldata_options) model (api.serializers.AudioTranscriptSerializer.Meta attribute) (api.serializers.ClinicalDataSerializer.Meta attribute) (api.serializers.ClinicalReportSerializer.Meta attribute) (api.serializers.DoctorSerializer.Meta attribute) (api.serializers.EncounterSerializer.Meta attribute) (api.serializers.PatientSerializer.Meta attribute) module api api.admin api.apps api.medical_workflow_views api.models api.serializers api.tests api.urls api.views auth_views core core.admin core.apps core.management core.management.commands core.management.commands.create_demo_data core.migrations core.migrations.0001_initial core.migrations.0002_audiotranscript_clinicaldata_clinicalreport core.migrations.0003_alter_clinicaldata_options core.models core.mongodb_models core.tests core.views manage medical_system medical_system.asgi medical_system.settings medical_system.urls medical_system.wsgi services services.clinical_extraction services.extraction services.mongodb_service services.ner_service services.nvidia_nim services.pdf_report services.transcription services.whisper_service

MongoDBService (class in services.mongodb_service)

N

name (api.apps.ApiConfig attribute) (core.apps.CoreConfig attribute)

NER (services.clinical_extraction.ExtractionMethod attribute) NERService (class in services.ner_service) NVIDIANIMService (class in services.nvidia_nim)

O

objects (core.models.AudioTranscript attribute) (core.models.ClinicalData attribute) (core.models.ClinicalReport attribute) (core.models.Encounter attribute) (core.models.Patient attribute)

operations (core.migrations.0001_initial.Migration attribute) (core.migrations.0002_audiotranscript_clinicaldata_clinicalreport.Migration attribute) (core.migrations.0003_alter_clinicaldata_options.Migration attribute) ordering (api.views.EncounterViewSet attribute) ordering_fields (api.views.EncounterViewSet attribute)

P

parser_classes (api.views.TranscribeAudioView attribute) password (core.models.Doctor attribute) past_medical_history (core.models.ClinicalData attribute) Patient (class in core.models) patient (core.models.Encounter attribute) Patient.DoesNotExist Patient.MultipleObjectsReturned patient_age (core.models.ClinicalData attribute) patient_data (core.mongodb_models.ClinicalData attribute) patient_gender (core.models.ClinicalData attribute) patient_id (core.models.Encounter attribute) (core.models.Patient attribute) patient_name (core.models.ClinicalData attribute)

PatientSerializer (class in api.serializers) PatientSerializer.Meta (class in api.serializers) PatientViewSet (class in api.views) pdf_file (core.models.ClinicalReport attribute) PDFReportService (class in services.pdf_report) phone (core.models.Patient attribute) physical_examination (core.models.ClinicalData attribute) place_of_birth (core.models.Patient attribute) post() (api.views.GenerateReportView method) (api.views.ProcessClinicalDataView method) (api.views.TranscribeAudioView method) PRIORITY_CHOICES (core.models.Encounter attribute) ProcessClinicalDataSerializer (class in api.serializers) ProcessClinicalDataView (class in api.views)

Q

queryset (api.views.DoctorViewSet attribute) (api.views.EncounterViewSet attribute) (api.views.PatientViewSet attribute)

R

read_only_fields (api.serializers.AudioTranscriptSerializer.Meta attribute) (api.serializers.ClinicalDataSerializer.Meta attribute) (api.serializers.ClinicalReportSerializer.Meta attribute) (api.serializers.DoctorSerializer.Meta attribute) (api.serializers.EncounterSerializer.Meta attribute) (api.serializers.PatientSerializer.Meta attribute)

report_content (core.models.ClinicalReport attribute) report_id (core.models.ClinicalReport attribute) reports (core.models.Encounter attribute)

S

save() (core.mongodb_models.AudioTranscript method) (core.mongodb_models.ClinicalReport method) save_patient_visit() (services.mongodb_service.MongoDBService method) save_patient_visit_transcript_only() (services.mongodb_service.MongoDBService method) serializer_class (api.views.DoctorViewSet attribute) (api.views.EncounterViewSet attribute) (api.views.PatientViewSet attribute) services module services.clinical_extraction module services.extraction module services.mongodb_service module services.ner_service module

services.nvidia_nim module services.pdf_report module services.transcription module services.whisper_service module set_default_method() (services.clinical_extraction.ClinicalExtractionService method) specialization (core.models.Doctor attribute) status (core.models.AudioTranscript attribute) (core.models.Encounter attribute) STATUS_CHOICES (core.models.AudioTranscript attribute) (core.models.Encounter attribute) StreamingStatusSerializer (class in api.serializers)

T

TEMPLATE_CHOICES (core.models.ClinicalReport attribute) template_type (core.models.ClinicalReport attribute) test_connection() (services.ner_service.NERService method) (services.nvidia_nim.NVIDIANIMService method) test_transcription() (services.whisper_service.WhisperService method) total_segments (core.mongodb_models.AudioTranscript property) transcribe_audio_blob() (services.whisper_service.WhisperService method) transcribe_audio_file() (services.transcription.TranscriptionService method) (services.TranscriptionService method) (services.whisper_service.WhisperService method) TranscribeAudioSerializer (class in api.serializers) TranscribeAudioView (class in api.views)

transcript (core.models.ClinicalData attribute) transcript_id (core.models.AudioTranscript attribute) (core.models.ClinicalData attribute) transcript_text (core.models.AudioTranscript attribute) transcription_completed_at (core.models.AudioTranscript attribute) TranscriptionService (class in services) (class in services.transcription) transcripts (core.models.Encounter attribute) TranscriptSegment (class in core.mongodb_models) TranscriptSegmentSerializer (class in api.serializers) treatment_plan (core.models.ClinicalData attribute) triage_priority (core.models.Encounter attribute)

U

update_clinical_data() (services.mongodb_service.MongoDBService method) update_patient_data() (services.mongodb_service.MongoDBService method) update_transcript_text() (services.mongodb_service.MongoDBService method) updated_at (core.models.AudioTranscript attribute) (core.models.ClinicalReport attribute) (core.models.Encounter attribute) (core.models.Patient attribute)

user_permissions (core.models.Doctor attribute) username (core.models.Doctor attribute)

V

validate() (api.serializers.LoginSerializer method) validate_audio() (api.serializers.AudioUploadSerializer method) validated (core.models.ClinicalData attribute) validated_by (core.models.ClinicalData attribute)

validated_by_id (core.models.ClinicalData attribute) vital_signs (core.models.ClinicalData attribute) (core.mongodb_models.ClinicalData attribute) VitalSigns (class in core.mongodb_models)

W

weight (core.models.Patient attribute)

WhisperService (class in services.whisper_service)